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CNEP

Constrained Non-Exonic Predictor

Software and Resources
  • CMImpute
  • CNEP
  • CSREP
  • ChromActivity
  • ChromGene
  • ChromHMM
  • ChromImpute
  • ChromTime
  • ConsHMM Atlas
  • ConsHMM
  • DREM
  • LECIF
  • Roadmap Enhancer-Gene Links
  • SEREND
  • SHARPR
  • STEM
  • χ-CNN
Illustration of CNEP output.

CNEP is software for predicting constrained-non exonic bases from large scale epigenomic and transcription factor binding data.

Access the CNEP project on GitHub

Citation:
Grujic O, Phung TN, Kwon SB, Arneson A, Lee Y, Lohmueller KE, Ernst J.
Identification and characterization of constrained non-exonic bases lacking predictive epigenomic and transcription factor binding annotations.
Nature Communications, 11:6168, 2020.

Jason Ernst Research Lab
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UCLA Biological Chemistry
615 Charles E. Young Dr. South
350B BSRB
Los Angeles, CA 90095

 

Email: jason.ernst@ucla.edu
Phone: 310-825-3658

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