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ConsHMM

Systematic discovery of conservations states and single-nucleotide genome annotation

Software and Resources

  • CMImpute
  • CNEP
  • CSREP
  • ChromActivity
  • ChromGene
  • ChromHMM
  • ChromImpute
  • ChromTime
  • ConsHMM Atlas
  • ConsHMM
  • DREM
  • ENSAS
  • LECIF
  • LEPAE
  • Roadmap Enhancer-Gene Links
  • SEREND
  • SHARPR
  • STEM
  • χ-CNN
ConsHMM Atlas: conservation state annotations for major genomes and human genetic variation

ConsHMM is software for discovering conservations states and annotating genomes at single nucleotide resolution based on them.

Access the ConsHMM project on GitHub

Citation:
Arneson A, Ernst J
Systematic discovery of conservation states for single-nucleotide annotation of the human genome.
Communications Biology, 248, 2019.

Jason Ernst Research Lab

UCLA Biological Chemistry
615 Charles E. Young Dr. South
350B BSRB
Los Angeles, CA 90095

 

Email: jason.ernst@ucla.edu
Phone: 310-825-3658

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