SHARPR
Systematic High-resolution Activation and Repression Profiling with Reporter-tiling
SHARPR is software for analyzing Massively Parallel Reporter Assay tiling designs allowing mapping at high resolution activating and repressive nucleotides across thousands of regulatory regions.
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Citation:
Ernst J, Melnikov A, Zhang X, Wang L, Rogov P, Mikkelsen T, Kellis M.
Genome-scale high-resolution mapping of activating and repressive nucleotides in regulatory regions.
Nature Biotechnology, 34:1180-1190, 2016.