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CSREP

A framework for group-wise summarization and comparison of chromatin state annotations

Software and Resources
  • CMImpute
  • CNEP
  • CSREP
  • ChromActivity
  • ChromGene
  • ChromHMM
  • ChromImpute
  • ChromTime
  • ConsHMM Atlas
  • ConsHMM
  • DREM
  • LECIF
  • Roadmap Enhancer-Gene Links
  • SEREND
  • SHARPR
  • STEM
  • χ-CNN
Illustration of CSREP output.

CSREP is a framework for group-wise summarization and comparison of chromatin state annotations.

Access the CSREP project on GitHub
Citation:
Vu H, Koch Z, Fiziev P, Ernst J.
A framework for group-wise summarization and comparison of chromatin state annotations.
Bioinformatics, 39:btac722, 2023.

Jason Ernst Research Lab
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UCLA Biological Chemistry
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Email: jason.ernst@ucla.edu
Phone: 310-825-3658

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